PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g007070.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 370aa    MW: 41159.2 Da    PI: 6.3781
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g007070.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35101022103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F++k+y++++d++++ li w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++
  Sopim12g007070.0.1  10 FVMKTYQMVNDPKIDGLIAWGTANNSFIVVEPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTH 91 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i rkk++
  Sopim12g007070.0.1  92 LLKNIVRKKHS 102
                         ********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.6E-49699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-36899IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-291099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEANNIIAPF VMKTYQMVND PKIDGLIAWG TANNSFIVVE PLDFSQRILP VYFKHNNFSS  60
FVRQLNTYGF RKVDPDKWEF ANEWFLRGQT HLLKNIVRKK HSRNSCSQKQ DESEDEEILT  120
EISRLKQEQK ALEHEVENMT RRLEATEKRP QQMMAFLCKV VDDPEILPRI LMEKERSKRL  180
SLTNREKKRR LVISNSTSCS SVKSEDAVGA TSSFHSPDAN FDKDAICQSS PSSGTPPPPT  240
AWLGSRPMIT YEPGTIQSIR SPDANFDKDT FYQSSPSSET PSTAWMNQQK VIIGGRPMMM  300
INEAYGSCPT MSSTLSTGSS ESGGFTAPPM DNFYGYDYGG GGRGGGGGTP ATEEASTPPY  360
PFSLFGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D2e-2379926129Heat shock factor protein 1
5d5v_B2e-2379926129Heat shock factor protein 1
5d5u_B2e-2379926129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340347GGRGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251603.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV523e-91HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLK4DBP40.0K4DBP4_SOLLC; Uncharacterized protein
STRINGSolyc12g007070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-92heat shock transcription factor C1